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News Archives

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08/03/2005New

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Release version 1.81. Fixed the installation problem in version 1.8. If you are running SeqVISTA as a local application, please download the version 1.81
bullet 07/25/2005New
bullet Release of v1.8, with new features includes:
bullet Enable search with IUPAC degenerate symbol.
bullet Enable Search All function to list sequence motifs that matches the searching regular expression
bullet Enable Search All in All Sequences function. Same function as above, but searched all listed sequences
bullet Enabled add searched results as the new features when searching with above two new search funtions.
bullet Enable sequence paste/delete in sequence panel.
bullet Add a new plug-in for mRNA genome-wide alignment: NCBI Spider
bullet 10/02/2004
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Release of Integration package so that other Java software can use SeqVISTA as a tool to visualize the sequence-related record.
bullet 02/15/2004
bullet Release of v1.5, add supports to SOAP service of regulatory motif detection.
bullet Various enhancements, will be documented in release note and corresponding sections of the user manual.
bullet 05/07/2003
bullet The installation instruction for Mac OS has been added based on user request.
bullet SeqVISTA has been reported by The Scientist Journal and here is the Snapshot.
bullet 03/21/2003
bullet Release of v1.02. All registered users will be notified by email.
bullet The problem of loading sequence using accession/gi number has been fixed. We have recently noticed that NCBI changed the default format when retrieving sequence using the Web API and corresponding change has been made for SeqVISTA. If you experience problems using SeqVISTA, please do not hesitate to notify us using email SeqVISTA@zlab.bu.edu. 
bullet This release also added following enhancement:
  1. Three new pop-out menu has been added into the tree panel as shown in the following figure. if the reference node has the PubMed/Medline ID, then corresponding link can be loaded into browser using the menu "PubMed/MedLine". The "Copy Text" menu is used to copy the tool-tip text and "Copy All Reference" is used to copy the reference information for corresponding sequence.

2. The tree panel can now auto-scroll the highlighted feature to the visible position, same as the sequence panel and graphic panel.
bullet 02/21/2003.
bullet We will now ask you to enter some information (only email is required) when you download SeqVISTA so we can provide you better service. We appreciate your time.
bullet 01/26/2003
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Release of v1.01 which adds two new features:

  1. Add GenScan Analysis Plugin  so the user can now directly perform exon prediction with GenScan.
  2. Based on user requests from University of Washington, we added format auto-identification when loading data through URL, which will facilitate the easy-data exchange within the research community. For example, SeqVISTA will recognize data from  URL: http://localhost/SeqVISTA/SampleInput/Alad_RM.gev as Gev format because it ends with .gev. If the the extention (gev in this example) is not registered in SeqVISTA.xml, by default SeqVISTA will try to interpret the data as GenBank format.
bullet 16/11/2002
bullet For windows version, the installation of SeqVISTA has been bundled with JRE, so there is no need for windows user to install JRE/JDK in order to run SeqVISTA
bullet There are two main changes for the case of multi-sequences:
  1. The center line in the graphic window has now been scaled as the length of the sequence entry. Sequence length is calculated in the following ways: If the entry has sequence source, the length equals source length, else it equals the maximum position of the features.
  2. If the entry does not have the sequence source, when that entry is selected, the sequence window will become empty, otherwise the sequence will be colored based the features of the entry.

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